Workshop Materials:
How to build a model from scratch in COBRApy
How to convert a COBRApy model to a json file for making an Escher pathway map: type, in COBRApy “cobra.io.save_json_model(model, “my_model_fbc2.json”)”
Some code showing how to load a model from BiGG into COBRApy and how to do some basic analysis
Code from the COBRApy tutorial
Slides:
A short introduction to SBML and its software support
Making maps with Escher and COBRApy
Extra reading: